Field Overview
Genomics involves analyzing biological data (typically from DNA or RNA). High Level data pipeline involves scanning, processing and sharing or publishing for research and clinical purposes.
Search for Original Data used in Genomics pipelines
Data captured directly from medical devices or instruments, often used as the starting point for analysis and processing. This includes files such as BCL, CRAM, FASTA, FASTQ, and Sample Sheet files.
extension:(bcl OR cram OR fasta OR fastq OR SampleSheet) AND type:file
Search for Processed Data used in Genomics pipelines
Data that has undergone intermediate computational transformations as part of a data pipeline, providing structured or analyzed outputs necessary for further processing or review
extension:(adam OR bai OR bam OR sam OR chimeric OR GeneCounts OR gvcf OR index OR log OR signal OR vcf) AND type:file
Search for Output Data used in Genomics pipelines
Finalized or derived data prepared for publication, reporting, or sharing purposes. These files often summarize findings or results (e.g., Wig, Interval, or Gene Counts files).
extension:(bed OR csa OR eamss OR fa OR fai OR fq OR gtc OR igv OR interop OR interval OR loc OR mt OR ped OR pileup OR sai OR sj OR tbi OR transcriptome OR wig) AND type:file
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